EC0900 Sequencing & Genotyping Services Framework
The University of Edinburgh (UoE) is intending to create a framework covering a wide range of sequencing and genotyping services. The UoE have internally available resources and this framework is designed to support these resources. End-users will be encouraged to approach our internal resources first and foremost but if capability, capacity or cost isn't suitable, then successful suppliers on the framework will be able to compete for this business. It is intended that each Lot will work on a ranked basis, with Dir...
Buyer
UNIVERSITY OF EDINBURGH
Value
£1,500,000
Published
18 Sept 2020
Closes
18 Sept 2020
Procurement details
Source
Pcs
Region
United Kingdom
Procurement method
Not provided
Category
Services
Contract starts
Not provided
Contract ends
Not provided
CPV classifications
73111000
Research laboratory services
Lots
Lot 1 Lot 1 - Short Read Genomic Sequencing & Analysis
Value not provided
Paired end library sequencing Long mate pair library sequencing Linked read sequencing Genome Sequence imputation Including data transfer QC of sequence data - specific to the lot Including Library Prep (and sample QC) - specific to the lot Bioinformatic Services - Data Analysis, Interpretation & Reporting of sequencing services - specific to the lot
Delivery: UKM75
Lot 2 Lot 2 - Long Read Genomic Sequencing & Analysis
Value not provided
Pacific Biosciences (PacBio) Sequencing Oxford Nanopore Technology (ONT/Nanopore) sequencing VASA-Seq Including data transfer QC of sequence data - specific to the lot Including Library Prep (and sample QC) - specific to the lot Bioinformatic Services - Data Analysis, Interpretation & Reporting of sequencing services - specific to the lot
Delivery: UKM75
Lot 3 Lot 3 - Transcriptome Sequencing & Analysis
Value not provided
RNA-Sequencing (mRNA and total RNA sequencing) full length transcript or cDNA sequencing Small RNA Sequencing Nanostring Microarray services Direct RNA sequencing (Oxford Nanopore) Including data transfer QC of sequence data - specific to the lot Including Library Prep (and sample QC) - specific to the lot Bioinformatic Services - Data Analysis, Interpretati...
Delivery: UKM75
Lot 4 Lot 4 - Targeted Sequencing & Analysis
Value not provided
Exome Sequencing Targeted / Gene Sequencing Custom sequence capture Including data transfer QC of sequence data - specific to the lot Including Library Prep (and sample QC) - specific to the lot Bioinformatic Services - Data Analysis, Interpretation & Reporting of sequencing services - specific to the lot
Delivery: UKM75
Lot 5 Lot 5 - Microbial Sequencing & Analysis
Value not provided
Whole Genome PacBio Sequencing (for microbial) Whole Genome Nanopore Sequencing (for microbial) Whole Genome Short Read Sequencing (for microbial) 16s Microbial Sequencing Including data transfer QC of sequence data - specific to the lot Including Library Prep (and sample QC) - specific to the lot Bioinformatic Services - Data Analysis, Interpretation & Repo...
Delivery: UKM75
Lot 6 Lot 6 - Single Cell Sequencing & Analysis
Value not provided
Single Cell Isolation and Sequencing Single Nuclei Isolation and Sequencing Single cell ATAC-Seq Including data transfer QC of sequence data - specific to the lot Including Library Prep (and sample QC) - specific to the lot Bioinformatic Services - Data Analysis, Interpretation & Reporting of sequencing services - specific to the lot
Delivery: UKM75
Lot 7 Lot 7 - Other Genomic Methods & Analysis
Value not provided
Methylation Sequencing (reduced representation or whole genome bisulphite sequencing) ATAC-Seq Library Preparation ChiP-Seq Library Preparation HiC library preparation / sequencing RIP-Seq Ribo-Seq Including data transfer QC of sequence data - specific to the lot Including Library Prep (and sample QC) - specific to the lot Bioinformatic Services - Data Analy...
Delivery: UKM75
Lot 8 Lot 8 - Optical Mapping
Value not provided
Optical Mapping Including data transfer QC of sequence data - specific to the lot Including Library Prep (and sample QC) - specific to the lot Bioinformatic Services - Data Analysis, Interpretation & Reporting of sequencing services - specific to the lot
Delivery: UKM75
Lot 9 Lot 9 - Sanger Sequencing / Genotyping
Value not provided
Sanger sequencing / genotyping Plasmid DNA extraction
Delivery: UKM75
Lot 10 Lot 10 - Array-based genotyping
Value not provided
Genotyping of Single Nucleotide Polymorphism (SNP) Array-based genotyping Include all-inclusive genotyping services - specific to the lot
Delivery: UKM75
Lot 11 Lot 11 - Other Genotyping services
Value not provided
Genotyping of simple sequence repeat (SSR) Genotyping by Microsatellite Genotyping of low number SNPs Include all-inclusive genotyping services - specific to the lot - specific to the lot
Delivery: UKM75
Lot 12 Lot 12 - Genotyping of transgenic animals
Value not provided
Genotyping of transgenic animals Genetic background characterisation 1-7 genes per animal, with up to 6 different alleles detectable for each gene a panel of genetic markers that can distinguish between the common lab strains of mouse and rat evenly spaced through the genome
Delivery: UKM75
Lot 13 Lot 13 - DNA/RNA Extraction
Value not provided
whole blood Saliva FTA paper Buccal swabs Mammalian cell lines/primary cells (cell pellets) Plant and animal tissue FFPE tissue Bacteria
Delivery: UKM75
Documents
Unlock document linkEC0900 Sequencing & Genotyping Services Framework
Not provided
The University of Edinburgh (UoE) is intending to create a framework covering a wide range of sequencing and genotyping services. The UoE have internally available resources and this framework is designed to support these resources. End-use...
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